Dataset Guide

Published on 30th November, 2022.

Introduction

Dataset is referring to data stored under /datasets on CREATE HPC.

The purpose of dataset is to share commonly used data among users.

The benefit of using a dataset includes:

• prevent duplication
• restrict user access to execute and read only. (write access can be provided to principal investigator, administrator and maintainer)

Datasets that are available on CREATE HPC

These are the following datasets that are available for request within CREATE:

• answerals
• bioresource
• bstop
• commonmind
• gtex_v8
• nygc_and_target_als
• projectminedf2
• rosmap
• tcga
• trem2
• ukbiobank

These are the datasets publicly available to all users within CREATE:

• alphafold
• image_net

If you need to obtain access to any of the dataset listed above, please apply for access on the e-research portal groups page or, if there is not an "Apply" button visible for the group, email one of the named contacts to request access.

answerals

Role	Email	Name
Principal Investigator	alfredo.iacoangeli@kcl.ac.uk	Alfredo Iacoangli

bioresource

Role	Email	Name
Principal Investigator	gerome.breen@kcl.ac.uk	Gerome Breen
Administrator	jonathan.coleman@kcl.ac.uk	Jonathan Coleman
Administrator	sang_hyuck.lee@kcl.ac.uk	Sang-Hyuck Lee
Administrator	rujia.1.wang@kcl.ac.uk	Rujia Wang

bstop

Role	Email	Name
Principal Investigator	michael.simpson@kcl.ac.uk	Michael Simpson
Administrator	nick.dand@kcl.ac.uk	Nick Dand

commonmind

Role	Email	Name
Principal Investigator	TBA

gtex_v8

Role	Email	Name
Principal Investigator	alan.hodgkinson@kcl.ac.uk	Alan Hodgkinson
Administrator	oliver.pain@kcl.ac.uk	Oliver Pain

image_net

Role	Email	Name
Principal Investigator	TBA

tcga

Role	Email	Name
Principal Investigator	francesca.ciccarelli@kcl.ac.uk	Francesca Ciccarelli

trem2

Role	Email	Name
Principal Investigator	alfredo.iacoangeli@kcl.ac.uk	Alfredo Iacoangli
Principal Investigator	angela.k.hodges@kcl.ac.uk	Angela Hodges
Principal Investigator	richard.j.dobson@kcl.ac.uk	Richard Dobson

ukbiobank

Role	Email	Name
Principal Investigator	gerome.breen@kcl.ac.uk	Gerome Breen
Administrator	jonathan.coleman@kcl.ac.uk	Jonathan Coleman
Administrator	alexandra.a.gillett@kcl.ac.uk	Alexandra Gillett

nygc_and_target_als

Role	Email	Name
Principal Investigator	alfredo.iacoangeli@kcl.ac.uk	Alfredo Iacoangli

projectminedf2

Role	Email	Name
Principal Investigator	alfredo.iacoangeli@kcl.ac.uk	Alfredo Iacoangli
Administrator	aminah.2.ali@kcl.ac.uk	Aminah Ali

rosmap

Role	Email	Name
Principal Investigator	jernej.ule@kcl.ac.uk	Jernej Ule
Administrator	charlotte.capitanchik@kcl.ac.uk	Charlotte Capitanchik
Administrator	silvia.hnatova@kcl.ac.uk	Silvia Hnatova